MRIQC: individual T1w report

Summary

Subject ID: 056_ExercisePre.
Date and time: 2018-05-07, 01:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.35621414506798593
cnr			3.651128290806072
efc			0.6353767530122317
fber			60.66550064086914
fwhm	avg		3.9121366666666666
fwhm	x		3.64518
fwhm	y		4.3117
fwhm	z		3.77953
icvs	csf		0.18893166284414545
icvs	gm		0.46641295683157125
icvs	wm		0.34465538032428333
inu	med		0.9579539895057678
inu	range		0.3404605984687805
qi	1		0.0
qi	2		0.0010658062282639122
rpve	csf		23.658693302130864
rpve	gm		10.808483736335052
rpve	wm		16.61946869970496
size	x		180
size	y		256
size	z		256
snr	csf		2.021863825771529
snr	gm		9.311353430078606
snr	total		9.070944913036449
snr	wm		15.879617483259212
snrd	csf		8.43099037647174
snrd	gm		20.394266292088027
snrd	total		20.15478771897948
snrd	wm		31.639106488378676
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	4.317932071438374
summary	bg	mad	20.706851959228516
summary	bg	mean	69.0152587890625
summary	bg	median	63.57537078857422
summary	bg	n	2649736.0
summary	bg	p05	37.48703384399414
summary	bg	p95	120.86156845092773
summary	bg	stdv	26.79012107849121
summary	csf	k	0.222978556354533
summary	csf	mad	143.16250610351562
summary	csf	mean	281.8985595703125
summary	csf	median	266.4777526855469
summary	csf	n	10601.0
summary	csf	p05	99.03901672363281
summary	csf	p95	510.29840087890625
summary	csf	stdv	131.79185485839844
summary	gm	k	-0.017569734802246995
summary	gm	mad	69.24501037597656
summary	gm	mean	647.4318237304688
summary	gm	median	644.6002197265625
summary	gm	n	43722.0
summary	gm	p05	537.7812530517579
summary	gm	p95	766.670556640625
summary	gm	stdv	69.22654724121094
summary	wm	k	1.0750565117519857
summary	wm	mad	57.35881042480469
summary	wm	mean	1001.8622436523438
summary	wm	median	1000.01513671875
summary	wm	n	205876.0
summary	wm	p05	901.5870513916016
summary	wm	p95	1106.1603088378906
summary	wm	stdv	62.974609375
tpm	overlap	csf	0.20626884698867798
tpm	overlap	gm	0.5291256904602051
tpm	overlap	wm	0.5421068072319031
wm2max			0.6868830538534547

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a473e3e94b4c5867d790343ef0923bdd
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.