MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.35621414506798593
cnr3.651128290806072
efc0.6353767530122317
fber60.66550064086914
fwhmavg3.9121366666666666
fwhmx3.64518
fwhmy4.3117
fwhmz3.77953
icvscsf0.18893166284414545
icvsgm0.46641295683157125
icvswm0.34465538032428333
inumed0.9579539895057678
inurange0.3404605984687805
qi10.0
qi20.0010658062282639122
rpvecsf23.658693302130864
rpvegm10.808483736335052
rpvewm16.61946869970496
sizex180
sizey256
sizez256
snrcsf2.021863825771529
snrgm9.311353430078606
snrtotal9.070944913036449
snrwm15.879617483259212
snrdcsf8.43099037647174
snrdgm20.394266292088027
snrdtotal20.15478771897948
snrdwm31.639106488378676
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk4.317932071438374
summarybgmad20.706851959228516
summarybgmean69.0152587890625
summarybgmedian63.57537078857422
summarybgn2649736.0
summarybgp0537.48703384399414
summarybgp95120.86156845092773
summarybgstdv26.79012107849121
summarycsfk0.222978556354533
summarycsfmad143.16250610351562
summarycsfmean281.8985595703125
summarycsfmedian266.4777526855469
summarycsfn10601.0
summarycsfp0599.03901672363281
summarycsfp95510.29840087890625
summarycsfstdv131.79185485839844
summarygmk-0.017569734802246995
summarygmmad69.24501037597656
summarygmmean647.4318237304688
summarygmmedian644.6002197265625
summarygmn43722.0
summarygmp05537.7812530517579
summarygmp95766.670556640625
summarygmstdv69.22654724121094
summarywmk1.0750565117519857
summarywmmad57.35881042480469
summarywmmean1001.8622436523438
summarywmmedian1000.01513671875
summarywmn205876.0
summarywmp05901.5870513916016
summarywmp951106.1603088378906
summarywmstdv62.974609375
tpmoverlapcsf0.20626884698867798
tpmoverlapgm0.5291256904602051
tpmoverlapwm0.5421068072319031
wm2max0.6868830538534547

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma473e3e94b4c5867d790343ef0923bdd
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.